Text Files
The input must be either a plain text file or an EMBL-EBI PRIDE XML file. When text files are used, each line refers to a single protein containing an appropriate accession code and, optionally, the protein name after a tab character. Examples:
- SP_Candida.txt:SwissProt Candida Albicans proteins (862 proteins)
- SP_HumanProteins.txt:SwissProt Homo Sapiens proteins (17009 proteins)
- LipidRaftsProteomics.txt:Lipid Rafts Analysis within PIKE publication. Ref: J Proteome Res. 2005 Nov-Dec;4(6):2435-41.(57 proteins)
PRIDE XML Files
With respect to XML files, PIKE accepts the latest PRIDE XML release (currently v2.1):
